Publications

Peer-reviewed publications

Publication
Efficient monotonic Gaussian processes via Randomize-then-Optimize Zhang, C., Everink, J. M. and Jørgensen, J.S. Journal of Computational Physics (journal) - 2026 Paper: Elsevier, Code: Zenodo
The geometry and well-posedness of sparse regularized linear regression Everink, J. M., Dong, Y. and Andersen, M.S. Inverse Problems (journal) - 2026 Paper: IOP
Bayesian velocity-space tomography with collision- and charge-exchange-physics prior from fast-ion D-alpha measurements at TCV with uncertainty quantification Rud, M. et al. Plasma Physics and Controlled Fusion (journal) - 2026 Paper: IOP
Self-supervised conformal prediction for uncertainty quantification in imaging problems Everink, J. M., Amougou, B.T. and Pereyra, M. SSVM 2025 (conference) - 2025 Paper: Springer, arXiv
Spatial regularization and level-set methods for experimental electrical impedance tomography with partial data Alghamdi, A. M. A. et al. Applied Mathematics for Modern Challenges (journal) - 2024 Paper: AIMS
Sparse Bayesian inference with regularized Gaussian distributions Everink, J. M., Dong, Y. and Andersen, M.S. Inverse Problems (journal) - 2023 Paper: IOP, Other: errata
Bayesian inference with projected densities Everink, J. M., Dong, Y. and Andersen, M.S. SIAM/ASA Journal on Uncertainty Quantification (journal) - 2023 Paper: DTU Orbit, SIAM, arXiv, Other: errata
Having fun in learning formal specifications Prasetya, W. et al. ICSE-SEET 2019 (conference) - 2019 Paper: IEEE, arXiv

Preprints

Publication
Random spanning tree Markov random field priors for Bayesian inverse problems in imaging Everink, J. M. arXiv (preprint) - 2026 Paper: arXiv
A computational framework and implementation of implicit priors in Bayesian inverse problems Everink, J. M., Zhang, C., Alghamdi, A. M. A., Laumont, R., Riis, N.A.B. and Jørgensen, J.S. arXiv (preprint) - 2025 Paper: arXiv, Code: Zenodo

Theses

Thesis
PhD: Uncertainty Quantification for Inverse Problems with Sparsity-Promoting Implicit Priors Technical University of Denmark - 2025 Thesis: DTU Orbit, Code: Github
MSc in Mathematical Sciences: One-bit Compressed Sensing with Generative Models Utrecht University - 2021 Thesis: UU student theses, Code: Github
BSc in Mathematics: Numerically Solving The Wave Equation Using The Finite Element Method Utrecht University - 2018 Thesis: UU student theses, Code: Github

Other

Contributed sections
Uncertainty Quantification in Inverse Problems with CUQIpy training material on how to use the CUQIpy library for uncertainty quantification in inverse problems Various sections on implicit priors - 2026 Source: GitHub